Scaffold Ga0211477_10014468

Overview

Basic Information

• Taxon OID: 3300020374
• Scaffold ID: Ga0211477_10014468
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3707
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_030
• Coordinates
  • Lat. (^o): 33.93
  • Long. (^o): 32.7322
  • Depth (m): 70

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011578	Metagenome	289	N
F012583	Metagenome / Metatranscriptome	279	Y
F029784	Metagenome / Metatranscriptome	187	N
F037261	Metagenome	168	N
F082798	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211477_1001446810	F011578	AGGAGG	MIAAFVTGVVVAIPTSLITMKLLNSSLFISNEELKEANARISLIINNLDDFREERMKDKMERLGITDKLDPRLSTRIK
Ga0211477_1001446816	F029784	AGGAG	MCTQIYAHPVEGYKCFANANKSQGTYYTCCDLDTKEIRYVTYIYDGYFMGYYLVQSAVKATENYGNCQEKIFLSSASNKWPYYKGNDDEYTIDRQYPMQYDIPSQDEIEYSYLDSLLTTGTNK
Ga0211477_100144683	F082798	N/A	MSELSALKQAQYHLKQLEGHIKDNKWYSHLYQHLAAVEGELQRQVNILENTKDPKVKILDNSAAGEIPETDRLYDVLEEQTNGFFPPDTSYTSLSRVRASSKYEDLLAEGVSPNNIKIVRVK
Ga0211477_100144686	F012583	GGAGG	MNTFNQTKIQTFDNYIMKGGDRSLQNIEDLCDYGFYTLGLDHEPELFNEVVIDVIRKLTGDLNS
Ga0211477_100144689	F037261	N/A	MKKWILTDTFDFYSKDANYWNFTDFDEAKRIGESLVSTVGIVYLWKGTNGSPIKWMKFD