Basic Information | |
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Taxon OID | 3300020374 Open in IMG/M |
Scaffold ID | Ga0211477_10000046 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 67645 |
Total Scaffold Genes | 76 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 53 (69.74%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_030 | |||||||
Coordinates | Lat. (o) | 33.93 | Long. (o) | 32.7322 | Alt. (m) | Depth (m) | 70 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020879 | Metagenome / Metatranscriptome | 221 | Y |
F040866 | Metagenome / Metatranscriptome | 161 | Y |
F048328 | Metagenome / Metatranscriptome | 148 | N |
F067759 | Metagenome / Metatranscriptome | 125 | Y |
F089156 | Metagenome | 109 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211477_100000462 | F089156 | N/A | MLLIQFTDTIDTSTLPVEILQSFKHNTYLIDCEISEYDIIYSITSNYPVLSMQSNEDCAYIDVYERLTTSYTTVSHEDTLAPLIEKLDLLEALQPQLLCFSWQMDRNYIIDYRIQKLIEAGNMVVCAGGNQDLPIHDISPIAVDGVVKVGGNKHNGHYQNWVDIYDVTVPNEPNSNKAVHTVCELMANKELELDYELGYYSDSSIRSAPWPLRLAQTPSNQTKYYEFNPISNLRYCAGEHLIPVRPGDQVSMLYGGCELENFVGSQFVDLDKELPRGITFDLQSGWLYGTFKFKTNMFHRFMVDLNGQLFEYHMISCDVENKLSYQDVKHKYFNRPYDAPPFTMREYWIPMARPVKLLEPGDPFIRTYNLNDYHLYREAE |
Ga0211477_1000004625 | F067759 | AGGA | MKEPKPEQKLEQQKQVYADSNNLEAHIIADMLRIESITTELREFKEDTKHRLNKMENWLVAIVGTSFTTLIAIVVSLLVNVFGS |
Ga0211477_1000004636 | F048328 | GGA | MSFGSNNTLYILGYPSIDLVLTSDGITVDNRPMNQTKLTVHKGFDSQLNFFVRNRDRVLQNLSGKTLYASIINPNTNKRVVFKQLSLVNSGTTGEAKLNFVPGDLASLSPGLYQISISESSDSGVTQSPLYANQNDRIISDLEIRSSLEYDPIATQTQTSFIDQGSNVFVTSAMYGNQDQNFNHSQHTIGVYMTNFVGNVTIQGSALESTPSQNSDWYDIDVQGDGSAEVPFASAFSGIDAFNFKVNTNWVRVKFNKTSGSLDKVLLRN |
Ga0211477_100000465 | F020879 | N/A | MTNKQKKKLHNIVQSTLKIVGCSLLFLGMSMGLGITTSVHMEIIAYIMLFLGTIIMIIHSFRGNDHMVLLVSSAGFLLISNAFLDTPTAFLIAEMYGIALTEDQGWFATYGKLFVEILKAIA |
Ga0211477_1000004670 | F040866 | AGGAGG | MSSKSLYETFGNEVSYEMRRDKLVQFIENNTINFPLPEASVEILVNMVPQSFKGMDPNKINIVENRLTSIGFTGPTAKTLAVALITVAEKQGVHPISYFELNEDSIKLAEQTYKAINSIRPKGNQIGLTVDKFNKDSKLASVIRP |
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