NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211477_10000046

Scaffold Ga0211477_10000046


Overview

Basic Information
Taxon OID3300020374 Open in IMG/M
Scaffold IDGa0211477_10000046 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67645
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (69.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_030
CoordinatesLat. (o)33.93Long. (o)32.7322Alt. (m)Depth (m)70
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020879Metagenome / Metatranscriptome221Y
F040866Metagenome / Metatranscriptome161Y
F048328Metagenome / Metatranscriptome148N
F067759Metagenome / Metatranscriptome125Y
F089156Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0211477_100000462F089156N/AMLLIQFTDTIDTSTLPVEILQSFKHNTYLIDCEISEYDIIYSITSNYPVLSMQSNEDCAYIDVYERLTTSYTTVSHEDTLAPLIEKLDLLEALQPQLLCFSWQMDRNYIIDYRIQKLIEAGNMVVCAGGNQDLPIHDISPIAVDGVVKVGGNKHNGHYQNWVDIYDVTVPNEPNSNKAVHTVCELMANKELELDYELGYYSDSSIRSAPWPLRLAQTPSNQTKYYEFNPISNLRYCAGEHLIPVRPGDQVSMLYGGCELENFVGSQFVDLDKELPRGITFDLQSGWLYGTFKFKTNMFHRFMVDLNGQLFEYHMISCDVENKLSYQDVKHKYFNRPYDAPPFTMREYWIPMARPVKLLEPGDPFIRTYNLNDYHLYREAE
Ga0211477_1000004625F067759AGGAMKEPKPEQKLEQQKQVYADSNNLEAHIIADMLRIESITTELREFKEDTKHRLNKMENWLVAIVGTSFTTLIAIVVSLLVNVFGS
Ga0211477_1000004636F048328GGAMSFGSNNTLYILGYPSIDLVLTSDGITVDNRPMNQTKLTVHKGFDSQLNFFVRNRDRVLQNLSGKTLYASIINPNTNKRVVFKQLSLVNSGTTGEAKLNFVPGDLASLSPGLYQISISESSDSGVTQSPLYANQNDRIISDLEIRSSLEYDPIATQTQTSFIDQGSNVFVTSAMYGNQDQNFNHSQHTIGVYMTNFVGNVTIQGSALESTPSQNSDWYDIDVQGDGSAEVPFASAFSGIDAFNFKVNTNWVRVKFNKTSGSLDKVLLRN
Ga0211477_100000465F020879N/AMTNKQKKKLHNIVQSTLKIVGCSLLFLGMSMGLGITTSVHMEIIAYIMLFLGTIIMIIHSFRGNDHMVLLVSSAGFLLISNAFLDTPTAFLIAEMYGIALTEDQGWFATYGKLFVEILKAIA
Ga0211477_1000004670F040866AGGAGGMSSKSLYETFGNEVSYEMRRDKLVQFIENNTINFPLPEASVEILVNMVPQSFKGMDPNKINIVENRLTSIGFTGPTAKTLAVALITVAEKQGVHPISYFELNEDSIKLAEQTYKAINSIRPKGNQIGLTVDKFNKDSKLASVIRP

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