Scaffold Ga0211660_10000638

Overview

Basic Information

• Taxon OID: 3300020373
• Scaffold ID: Ga0211660_10000638
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX555949-ERR598946)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28000
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (78.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_100
• Coordinates
  • Lat. (^o): -12.9057
  • Long. (^o): -96.155
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040335	Metagenome / Metatranscriptome	162	N
F090857	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211660_1000063838	F090857	AGGAG	MIVNIRDIKRTDFNLAWQNPDTIARFNKVIDKKYDLGSAEMLYKLSRLSYKRQFWDFCCRNHLKIVVDDINNEYERYKVWLENQPTSEPTEEPETYGDATMRHSS
Ga0211660_1000063848	F040335	AGGAG	MPKKIDPAGHLKKYTWKPGESGNPNGRPLGSKNKLKLTKEAFEEIAGVSPGEMLAMIAQRQFAQTTAAGDAMAIKAITEANKYIEPTQDAKTASEERVEDMSEEDLLERILELTDQHLDEKKH