Scaffold Ga0211500_1029727

Overview

Basic Information

• Taxon OID: 3300020371
• Scaffold ID: Ga0211500_1029727
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000003 (ERX555978-ERR598991)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1761
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_034
• Coordinates
  • Lat. (^o): 18.4017
  • Long. (^o): 39.855
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032309	Metagenome / Metatranscriptome	180	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211500_10297273	F032309	N/A	PFKDITHFWDIPYKEMLDEVKSVDEKYWRRPFDADNDQINRMKLDDSESVNHYPGLKGDLIEAHGWKSLCFLNETGDSKDQITRFPPVFNTAGDYKETLKYFLNNRKWTNVAEFSPTLVKFFKEVISKYMHVGQIFVTRLEGGGVITEHNDIPEDSKHLLDGEQVHMFDMLNTFNLCLNHVKSCYSVFDNKVMPAYDGCLRWTNVGKKHWVVNMNRNPQYQIIWQGIYKKQFRQLVMENK