NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211703_10111945

Scaffold Ga0211703_10111945


Overview

Basic Information
Taxon OID3300020367 Open in IMG/M
Scaffold IDGa0211703_10111945 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000508 (ERX556112-ERR599005)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)692
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7887Long. (o)-17.9142Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002747Metagenome / Metatranscriptome533Y
F006347Metagenome / Metatranscriptome375Y

Sequences

Protein IDFamilyRBSSequence
Ga0211703_101119451F002747AGGAGMAKDQRFYVNACIEIYVPDQGFGEKAMKNEQTDAEWFANEVASQIPKAINKNFEYSERPYSVNDVMVGKVERS
Ga0211703_101119452F006347N/AKWWFIMIDRITELLNELEQELNDGYNTLPDYQANDEGKTYVNGAQATLYELQKQITELKQGLEQGKNFSLLGEELNNG

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