NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211489_10027697

Scaffold Ga0211489_10027697


Overview

Basic Information
Taxon OID3300020366 Open in IMG/M
Scaffold IDGa0211489_10027697 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000437 (ERX556091-ERR599146)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1480
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_065
CoordinatesLat. (o)-35.2087Long. (o)26.2932Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017050Metagenome / Metatranscriptome243N
F085688Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0211489_100276971F085688N/AMIILGCITKYKPEDIRPFVESIEETGYKGKKIMMVYEVPQETIDYLKSKGWDLYQNELQQHIILQRFRDIYKLLEQFPNEDVVWCDVKDVIFQKDPTDWIELNMDEPLLAFSECITMKDDPWACVNSGTSFPMEWEWLQNKVSYCAGTIVGDSDYLRDLFINIYRWSMTTANSEQLSDQAAYNVLINLYPFMDCVQKVNQEEGFVTQLGT
Ga0211489_100276972F017050GGAGGMSKLISGYLWAWTEWEAGKKSMQTLKKFYPDADLFINVDYDGDVENYTKVGEEIGATVTRNNFQVGYPGNFGDRDIGYEHWTKEKAVEWLRGIYDACKKTDSKYIMLFEEDDFVLKPISILNEEFSMAIHPTLPSPTGRMRGNYIPHQFFEYSKHVGGVDNCPGYASGGGTIFNRLQYMDSYEKALGFYLEHFDDFCKINKIYGWQDFLFQYIMMLAGYEIIQNTKLCEHWEVPNYDDFEILTACKDHNLIKL

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