Scaffold Ga0211489_10000734

Overview

Basic Information

• Taxon OID: 3300020366
• Scaffold ID: Ga0211489_10000734
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000437 (ERX556091-ERR599146)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9145
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_065
• Coordinates
  • Lat. (^o): -35.2087
  • Long. (^o): 26.2932
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011410	Metagenome	291	Y
F047731	Metagenome	149	Y
F090847	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211489_1000073410	F047731	AGGAG	VTYTDKDPVEVTLGICENCSSYVPFIRLINNDDAQKVYQCMSCKAKHTQYVNGKVTFNYLEDAITVKRN
Ga0211489_100007342	F090847	N/A	MIDEFEIEWIPEDTGAPYTEVDMVEPALDDMPSHIADKLCKTKFGHTNWARLSQMSPSDLVGNPCDIDYTNGIIYFKNPTLV
Ga0211489_100007345	F011410	AGG	MKDLKIKLEWSTSDLLVWVILAISLGLMIVNIVTMANMYSVIETMWAEIQQVKETNISLYQFIEAHRDDFN