Scaffold Ga0211538_1005588

Overview

Basic Information

• Taxon OID: 3300020364
• Scaffold ID: Ga0211538_1005588
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000097 (ERX556021-ERR599037)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5560
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_039
• Coordinates
  • Lat. (^o): 18.735
  • Long. (^o): 66.3895
  • Depth (m): 270

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025767	Metagenome / Metatranscriptome	200	Y
F078823	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211538_10055882	F078823	AGG	MMTEVLDNVKPNIEVLDQDYIDFEYSFTKEGEDFTHHEMDGNADEGDDLEVITLWDESNKFEVTIERGYKQRGTEGEGEDLEYIYDMNYQGMSIEGDYDAYVTWLKKEWPDVYDNDTGRISEVVPDLEELIS
Ga0211538_10055886	F025767	AGGAG	MRYRMINPDSGEPEDIECSVADMEVMKQSGWIMVFTPNPNISIISGRDHSGQSGGHGTDQGWKDVLRRIKSNNPKSNIDI