NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211538_1004406

Scaffold Ga0211538_1004406


Overview

Basic Information
Taxon OID3300020364 Open in IMG/M
Scaffold IDGa0211538_1004406 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000097 (ERX556021-ERR599037)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6597
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_039
CoordinatesLat. (o)18.735Long. (o)66.3895Alt. (m)Depth (m)270
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002507Metagenome553Y
F027810Metagenome / Metatranscriptome193N

Sequences

Protein IDFamilyRBSSequence
Ga0211538_10044066F027810AGGMENKKVGLDAFNDLAKSHDAHVKEVERLQKELDELKKLKLVDEHGETLLECEVGDTHHQAILEIGLNTILEKFVKKENE
Ga0211538_10044067F002507N/AMTYYLLLKNDTEEDVYFDSNVLGEESFEVFYPEKGFIALKNIVHNQPELLESLQILDDHKKQYTITEFLDKVEQWKIKR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.