NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211712_10110401

Scaffold Ga0211712_10110401


Overview

Basic Information
Taxon OID3300020360 Open in IMG/M
Scaffold IDGa0211712_10110401 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000459 (ERX555918-ERR599165)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)677
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_070
CoordinatesLat. (o)-20.3976Long. (o)-3.2009Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054784Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0211712_101104011F054784N/AIIMKLENLGKNQTRLIMQVQDHTENFTWDKDIYFSYGVPVLVVNYRDAEIHETAEKYSTTTSKHLNAFKRMCNRYDERGGPMTFEHGREWQTFLAPESRMRVVAEQC

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