Scaffold Ga0211712_10001740

Overview

Basic Information

• Taxon OID: 3300020360
• Scaffold ID: Ga0211712_10001740
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000459 (ERX555918-ERR599165)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7337
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_070
• Coordinates
  • Lat. (^o): -20.3976
  • Long. (^o): -3.2009
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F011410	Metagenome	291	Y
F047731	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211712_1000174013	F047731	GGAG	VTYTDKDPVEITLGICEKCENYVPFIRLVVPEDKKVFQCMTCKTKHEQHINGKVTFNYVDEVYKLKRN
Ga0211712_100017407	F000720	AGGAG	MTLIKENKVRKEIPNRMMCATFAIPIDGRRVVGTLDYIASKSGLTPMAFWIKIKPTDSYLDRELRASGKLISRCLQHGESLKDLVDTLSQDNIAGHMANYLHKNMEDIIMGKQPDRKQRMLSTDPYAMKE
Ga0211712_100017408	F011410	GAGG	MKDFNIKVSWSTNNVLTWVIFLVSLGLMIVNIVTMYTLYNVIETMWHEITQVKETNSYLYQFIEEHRNDFN