Scaffold Ga0211612_1062868

Overview

Basic Information

• Taxon OID: 3300020356
• Scaffold ID: Ga0211612_1062868
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX555994-ERR599157)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 859
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_123
• Coordinates
  • Lat. (^o): -8.896
  • Long. (^o): -140.2861
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034554	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211612_10628681	F034554	N/A	NGTPTADKSLSEVDISDYEIGITEVGDLETSLVVNYKKHPAENEYLQQKTYVSAVSGSVHSTIFDNAAHQKQELNLDMLYSAVDGAGGDRNSDWINFRSALFGQYKTTMSATIINPEKYGMLQVGDFLDFGDTLFGNLGTPFSEISDTFDDMVAMPTRLFSEQWSDKRFIITNLKRQIGKVSVQCREV