NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211608_10048229

Scaffold Ga0211608_10048229


Overview

Basic Information
Taxon OID3300020354 Open in IMG/M
Scaffold IDGa0211608_10048229 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000408 (ERX555905-ERR599164)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1000
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_064
CoordinatesLat. (o)-29.5082Long. (o)37.9202Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008085Metagenome / Metatranscriptome339Y
F022672Metagenome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0211608_100482292F022672N/AMTIENRDYGSWITEELQSLLDAHIFNRDHFAETYTDRADLNKEIQLIKNEIIRREKSE
Ga0211608_100482293F008085AGGAGGMAGSIIVRYARKTYKQQKAEERNSAVFKNLTHSVDIIPESMSIMTFNTQKEASKFAEKIRDEGYHIIEIKDDYRKS

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