Scaffold Ga0211613_1000252

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211613_1000252

Scaffold Ga0211613_1000252

Overview

Basic Information
Taxon OID	3300020353 Open in IMG/M
Scaffold ID	Ga0211613_1000252 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX556093-ERR598998)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16666
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (88.24%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_123
Coordinates	Lat. (^o)	-8.896	Long. (^o)	-140.2861	Alt. (m)		Depth (m)	150
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011446	Metagenome / Metatranscriptome	291	Y
F012162	Metagenome / Metatranscriptome	283	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211613_100025214	F012162	AGGAG	MLLSEQQTKFYLDEMIQHYGEKENNTSGHFSWERSEASYRRKAFEDMKMVLFGDDDNGRQQKQT
Ga0211613_10002522	F011446	AGGAG	METMVLGWASSQSWWGIFTTVVVVANAVTMTLKDSKAVKIPFLGKIWPVLNWLSLNIGNNKNKK

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