Scaffold Ga0211505_1007448

Overview

Basic Information

• Taxon OID: 3300020352
• Scaffold ID: Ga0211505_1007448
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3011
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030877	Metagenome	184	N
F040865	Metagenome / Metatranscriptome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211505_100744810	F030877	GAGG	MKKLLLAASVFVIASCTASISIKAQEFNGDPGAQPLPEAAPLSPNKNKESVPNYPDTVQQTTMGCSMLHKFSEVREKWGERPLFSGLGLQLVIPPNVYGAPAKPIKRPMTLFVNQDTGTWTLVSFWTDNYACLVANGRDFVPGGSSFSDKGNL
Ga0211505_10074488	F040865	GGAGG	MYYNLDIVAIDGPVFSGSFKSIYPMAEKIVRHLGSMFEVGSGYAVSSDGVCTAMISGCTWTDIRDVIRDMESQEESYNESANAEPAF