NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211599_1080454

Scaffold Ga0211599_1080454


Overview

Basic Information
Taxon OID3300020350 Open in IMG/M
Scaffold IDGa0211599_1080454 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000676 (ERX556036-ERR599084)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)760
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_124
CoordinatesLat. (o)-9.067Long. (o)-140.6346Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013133Metagenome / Metatranscriptome274Y
F054355Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0211599_10804541F013133N/ARPSNNWFVSTPRDHSITNGVGIGLNKWGVGADLFYGGSTEDVLDGEGVVTEEGGQIWSSRFSYGVSFAGIDSKFGLSLNSNEAQLVDVSLGNDLFTTSFEYDLSEEADGAYWLRGVVTPPQAQGAFLLIGLNSDEVVTYGVGYKCSDNMKVVSEFNSGLKDAEGNEVENDFSIRASYSF
Ga0211599_10804542F054355GGAGMNIKSIFGSIGDVLSGIAGVLTGLVSVSILSTVVFGSGWLGTDIIANISALVGSFLSGGVTGL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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