Scaffold Ga0211600_1022862

Overview

Basic Information

• Taxon OID: 3300020348
• Scaffold ID: Ga0211600_1022862
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX556089-ERR599161)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1689
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_124
• Coordinates
  • Lat. (^o): -9.067
  • Long. (^o): -140.6346
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054784	Metagenome	139	Y
F088736	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211600_10228621	F088736	AGGA	METKYINIPNTIENKIKVRQAVAEFMVQKVLPKDAIEQMAMDYLEETFRDAKHTIGDLARMVKETEIPPLHAKAPEQPNQMLCFGTIPGYTGNGPEYYFFTKEEDYEYMACEVKEITSANEEGVQ
Ga0211600_10228623	F054784	AGGAG	MKLEQLGKNQTRVIMQIPEPGADWTWDKDIYFSYGKPVLIVNYRDATVHETAEKYSTTTSKHINAFKRMSNRFDERGGPVEFQEGKREWVHVLAPESRMRTVAGEC