Scaffold Ga0211600_1000547

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211600_1000547

Scaffold Ga0211600_1000547

Overview

Basic Information
Taxon OID	3300020348 Open in IMG/M
Scaffold ID	Ga0211600_1000547 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX556089-ERR599161)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	18446
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_124
Coordinates	Lat. (^o)	-9.067	Long. (^o)	-140.6346	Alt. (m)		Depth (m)	120
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010460	Metagenome	303	Y
F039105	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211600_100054717	F039105	AGGAG	MSNKVSYDFTLDSCVAVDAPIGTDPETLIEQAKAKFVQRILEGDIVVVFENIFDSETGVYDEDWKTYNREIEDE
Ga0211600_100054718	F010460	GGAG	MSNTTVPTHEMIKNLADYIVNGMSFQELTQFVYDDVYSIMLEDNDMFYANLEQLGYEPEDFTNEKFRGEDDN

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.