NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211600_1000280

Scaffold Ga0211600_1000280


Overview

Basic Information
Taxon OID3300020348 Open in IMG/M
Scaffold IDGa0211600_1000280 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000676 (ERX556089-ERR599161)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25326
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (91.30%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_124
CoordinatesLat. (o)-9.067Long. (o)-140.6346Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F013820Metagenome / Metatranscriptome268Y
F022754Metagenome / Metatranscriptome213Y
F036736Metagenome / Metatranscriptome169Y
F044544Metagenome / Metatranscriptome154Y
F048916Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0211600_100028038F036736GGAGVDKLNEMLIGALAVVGSFVTKRVFSNHDSLSNRISALEKTVVTKDDLIHIERNVEMILTHLINKGDKP
Ga0211600_100028039F013820AGGAGMIKTVIDFVDKMMPGHKTYAIMIIGMGMMICQMLGYHHFDQEAWGVLGIGGAATWKMGQDRKKK
Ga0211600_10002804F044544AGGAGMSYFVVKYCELKACQHWRLGNTCTKDGLPIAENLKYVADLHDSSICQVRKQINEYRLEHLLEEPK
Ga0211600_100028040F022754N/AVNELAIAILLVIPSPYKMVNWTVNQVPTQIQLIHKSGLEVSYNASPVSCSFRPRNNREMVFKSSETACYAVYDLGSPTFIRHPDHWYPVEPQKSLKMNVGD
Ga0211600_100028041F002078AGGAGMDIAAMFEGQGWFEIAGQVVLIFTAITGALPDKFVQKIPILSTVWPIFNWLAGNIFNNINHPKGMAASADVEKEIDEAKAKVRARSGMPDVLDGM
Ga0211600_100028042F048916GGAMGILSELAAPVANFGLGLYNADTYYSKECAWYEEVRLSQDTKQWLLQNNPPPIVSEDLAQVAKNNDIYKQVCDPKEPKD

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