Basic Information | |
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Taxon OID | 3300020348 Open in IMG/M |
Scaffold ID | Ga0211600_1000280 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000676 (ERX556089-ERR599161) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 25326 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 42 (91.30%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_124 | |||||||
Coordinates | Lat. (o) | -9.067 | Long. (o) | -140.6346 | Alt. (m) | Depth (m) | 120 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002078 | Metagenome / Metatranscriptome | 596 | Y |
F013820 | Metagenome / Metatranscriptome | 268 | Y |
F022754 | Metagenome / Metatranscriptome | 213 | Y |
F036736 | Metagenome / Metatranscriptome | 169 | Y |
F044544 | Metagenome / Metatranscriptome | 154 | Y |
F048916 | Metagenome | 147 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211600_100028038 | F036736 | GGAG | VDKLNEMLIGALAVVGSFVTKRVFSNHDSLSNRISALEKTVVTKDDLIHIERNVEMILTHLINKGDKP |
Ga0211600_100028039 | F013820 | AGGAG | MIKTVIDFVDKMMPGHKTYAIMIIGMGMMICQMLGYHHFDQEAWGVLGIGGAATWKMGQDRKKK |
Ga0211600_10002804 | F044544 | AGGAG | MSYFVVKYCELKACQHWRLGNTCTKDGLPIAENLKYVADLHDSSICQVRKQINEYRLEHLLEEPK |
Ga0211600_100028040 | F022754 | N/A | VNELAIAILLVIPSPYKMVNWTVNQVPTQIQLIHKSGLEVSYNASPVSCSFRPRNNREMVFKSSETACYAVYDLGSPTFIRHPDHWYPVEPQKSLKMNVGD |
Ga0211600_100028041 | F002078 | AGGAG | MDIAAMFEGQGWFEIAGQVVLIFTAITGALPDKFVQKIPILSTVWPIFNWLAGNIFNNINHPKGMAASADVEKEIDEAKAKVRARSGMPDVLDGM |
Ga0211600_100028042 | F048916 | GGA | MGILSELAAPVANFGLGLYNADTYYSKECAWYEEVRLSQDTKQWLLQNNPPPIVSEDLAQVAKNNDIYKQVCDPKEPKD |
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