Scaffold Ga0211504_1035620

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1035620
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1238
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006939	Metagenome / Metatranscriptome	361	N
F033796	Metagenome / Metatranscriptome	176	N
F086976	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_10356202	F086976	AGGAG	MSGDKIPDLDSNGKFVRPLSGNKVYKTETELTKGLLNDEIPHELYVELIKVYHEAYGEAPEYGFTGVGCISFAESMLQYHQDGVERRIRTPQLYDEYSFKQESNDE
Ga0211504_10356204	F033796	AGGA	MSSSNENKTYKVAGVHIGKKGVTVLDGNKRVLEEAEQSAKLLTGKYALENSLGITNFVAFNTHALTMLPPYSIDMEAEWNYVVEQEGDTPSVEINRQAEGSI
Ga0211504_10356205	F006939	AGAAGG	MTLPLNMVTNVLSENQNKFITVKFLTKDNEERTYTGRMNVIKGLKGNEKGRIAAEALRRAGYITLKTKQGYKCFNVDRVLGFVAGGRRIFGL