Scaffold Ga0211504_1024905

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1024905
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1560
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F035770	Metagenome	171	Y
F087206	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_10249052	F002399	GGAG	MSQEIRSKHKSIIGQLRKKYGLKDNTPIHKVEIAMSPKDWKDFSEALTFPNGKPTRDK
Ga0211504_10249053	F035770	GAGG	MKPYKPISFGMAEFAYARHLRDELGHTGEIIYPNKDISKQDRDGVWLLLTITGERLGTVSPNGTVRTT
Ga0211504_10249054	F087206	AGGGGG	MSNHYSEQEIEDIQNYVLEQDRKGLLQDEITDISIMNNLHQDDDRDEILEFITEAILYEKNIGGLV