Scaffold Ga0211504_1010535

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1010535
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2784
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032309	Metagenome / Metatranscriptome	180	N
F033761	Metagenome / Metatranscriptome	176	Y
F075318	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_10105352	F033761	GGAG	MTIINNHTYFVLDTVFQNRHKELFDFFEGQGADIEINEDFAGLKTILTSKDKDDYPYDFDPAFESNLDNAKGFVLHLKISGEVVATYAAKKLAIPTFVDAMKEKFSGTYEDVSDISGQSAYSSCQWVSKDHRGKKLGRILDHLKKHICFDLMKCTNNYAIHKEALANYHTEHLGYNTTQKLALIPNGDVGGAGEVIDKIYNLTYTTATEWTNKQSDIKALYS
Ga0211504_10105353	F032309	GAG	MRNETQEFFKFTQSKPFMDITHFWDIPYEEMLDEIKLVNEDYWRRPFDADNNQIDRMKLDDSESVNHYPGLEGALIEAHGWKSLCFLNETGDSKDQITRFPPIFNTAGDYKATLKYFLDNRKWTNVSEFSPTLVKFFKEVISKYMHVGQIFVTRLDGGGVITEHNDIPEDSKHLLGGEQVHMFDMLNTFNLCLNHVQSCYSVFDNKVMPAYDGCLRWTNVGKKHWVVNMNRNPQYQIIWQGIYKKDFRRLVMENK
Ga0211504_10105355	F075318	N/A	LATRQFGCMGAIDFETPKQSLTFIKKMRKQGFILEDGSENVSTAVFCLPYIISDDDFDLFERAIKECM