Scaffold Ga0211504_1002548

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1002548
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7392
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_10025484	F005243	N/A	MADVKNLDPNKDPQLSKEELTKRREEITQFYKDNIPHLTVQAEYEDLLATIDKARAERLQAQMFMAQTAAQQDNGGEASEDEKAFKEAMEKAAAGAQ
Ga0211504_10025486	F004866	GAG	MAIVKKVDLKLKVNIDESIKYQILTYCFFNDILVTNSDLKFLCELSKTPSIELTKFCLTLVNMNIFKSPQSARNAITKAERKGLLSKKGNNKKTITIKPDINIQTEGLVLLDYKILGNASQVTQGV
Ga0211504_10025487	F006666	N/A	MHPKSHKEFRKNIAEEVEVHPQVVEDFITFYYAKLRRKLSDLSFPRVYVEGLGTFELRKAKLDKAIKKNKSLLGNIAKRTYNGYAKSEDIKTNIEQMESAMKQMHDDILKKENFRNNG