Scaffold Ga0211504_1001158

Overview

Basic Information

• Taxon OID: 3300020347
• Scaffold ID: Ga0211504_1001158
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12354
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_067
• Coordinates
  • Lat. (^o): 32.1
  • Long. (^o): 17.7
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020604	Metagenome	223	Y
F038422	Metagenome	166	N
F064113	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_100115814	F064113	AGAAGG	MTYMIYQRPLSDDQVKRINAQQDSDFALAYFALMFPNGENANQRALDAIELGMYKQTMLISCTDGMSLALSDLFDAGNGYPKSCINVVSLQKHPSMSVGDIAVDLLENTAVMCMPVGWKELDLKLTLA
Ga0211504_100115817	F020604	GGAG	MTDKPTTPEEWEQWRKDRNQANLDAFNALQADQQDAIKQTFKALEAAQDTLRDCNDLWLSDIKELDHAFWQMRHNFLAVFDPENVDL
Ga0211504_100115821	F038422	AGGA	MPNNMIIQMPSGMRLSITQGVGMMGDRDRGSIEVGVLDNKGNLIGDPRGYVDGSQLHQILEGML