Basic Information | |
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Taxon OID | 3300020347 Open in IMG/M |
Scaffold ID | Ga0211504_1001158 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12354 |
Total Scaffold Genes | 28 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (92.86%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_067 | |||||||
Coordinates | Lat. (o) | 32.1 | Long. (o) | 17.7 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F020604 | Metagenome | 223 | Y |
F038422 | Metagenome | 166 | N |
F064113 | Metagenome | 129 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211504_100115814 | F064113 | AGAAGG | MTYMIYQRPLSDDQVKRINAQQDSDFALAYFALMFPNGENANQRALDAIELGMYKQTMLISCTDGMSLALSDLFDAGNGYPKSCINVVSLQKHPSMSVGDIAVDLLENTAVMCMPVGWKELDLKLTLA |
Ga0211504_100115817 | F020604 | GGAG | MTDKPTTPEEWEQWRKDRNQANLDAFNALQADQQDAIKQTFKALEAAQDTLRDCNDLWLSDIKELDHAFWQMRHNFLAVFDPENVDL |
Ga0211504_100115821 | F038422 | AGGA | MPNNMIIQMPSGMRLSITQGVGMMGDRDRGSIEVGVLDNKGNLIGDPRGYVDGSQLHQILEGML |
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