NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211706_1043217

Scaffold Ga0211706_1043217


Overview

Basic Information
Taxon OID3300020345 Open in IMG/M
Scaffold IDGa0211706_1043217 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000427 (ERX556079-ERR599137)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)956
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7006Long. (o)-17.9915Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043077Metagenome157Y
F051208Metagenome144N

Sequences

Protein IDFamilyRBSSequence
Ga0211706_10432171F043077AGGMRSLYFIVSFLVLFCTSVFSQITGPKVGEIVGQMGSTFNERDGGTEKVTMGYELQMKDFLQTGEDGGMIISYVDGTKFTMGPNTEKTIDEF
Ga0211706_10432172F051208N/AIQDTHIDLDIRGDSNDFWAYVRGDSHFLYVLMSGDSNDVEFYGATNSTGMVGSSKANVMIGPNVESHGIFADTSGDEGATIDIYIIGSSNQVHMASWGASNYQVHDVIGDSNILDVHPDATGSHVRMVQYGDNNYMKTVTSGNNNTIRYYGSGGNNNAQIYLYTSGSIVELKQTGGANTANLTVNGDSIYDYTLLVDQDGSDTCTYTFNRNDQTSDTTVQLTNSGC
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