Scaffold Ga0211706_1002147

Overview

Basic Information

• Taxon OID: 3300020345
• Scaffold ID: Ga0211706_1002147
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000427 (ERX556079-ERR599137)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5523
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Bathycoccus sp. RCC1105 virus BpV (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_072
• Coordinates
  • Lat. (^o): -8.7006
  • Long. (^o): -17.9915
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016003	Metagenome / Metatranscriptome	250	Y
F105925	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211706_10021476	F105925	N/A	MDKTKLQNILTLVDKNNTAFPENDYLDICRSLMDVYNEEIMPENHVAIPLEHPKNNQPRVPGEEDFYAAMSFLQKTGKYDCLYLAEKLKREQKEVSRYPLKRITNRVERDVRKKLCYDHDIPYDENSIPTIQKINLLLGSSYDLKDECKKYMKACNDTVEEYKEHLRMVENSFKLKIDQFKEFHETLGECLNSINYT
Ga0211706_10021477	F016003	N/A	MIMKSIWKMCENGELDELKKRRNEINQLIEDIPNDGDDLREDEDDISFAAAYCKDHDTGLETFKYLYEECGYPRHCVHYAMVGAAASRNAKLINYIYNDIDEHEKAEFVGDLEEELAMTDHPNPSVFIEYALFELNKV