Scaffold Ga0211508_1047695

Overview

Basic Information

• Taxon OID: 3300020337
• Scaffold ID: Ga0211508_1047695
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000075 (ERX289009-ERR315861)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1011
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_023
• Coordinates
  • Lat. (^o): 42.1874
  • Long. (^o): 17.7189
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021207	Metagenome	220	Y
F105326	Metagenome	100	Y
F105336	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211508_10476952	F105336	AGGAG	MKLRQQQINRVEQILSDLERKVEEMEQQDYITYDLGKDLENISFMLDMLREEIKDE
Ga0211508_10476954	F021207	AGGAG	MSKRFKQVNIQQFAILVQEVDISKYTQEEYVDIIEEIYMTIFRHNTDGDFVIPTMPNEEGNWKVHKSSATKEEVMELIKEGRVIWNKDVI
Ga0211508_10476955	F105326	GGAG	MEQRRNLTPKEHWELHQGLWYMLGCDMQLKYKDRTTAVYVDNKAKLKYTYSIKGFIKWFPISKEDKI