Scaffold Ga0211690_1005673

Overview

Basic Information

• Taxon OID: 3300020335
• Scaffold ID: Ga0211690_1005673
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX556030-ERR599035)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4048
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_082
• Coordinates
  • Lat. (^o): -47.1906
  • Long. (^o): -58.2682
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005796	Metagenome / Metatranscriptome	390	Y
F025150	Metagenome / Metatranscriptome	203	Y
F047922	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211690_100567310	F047922	AGGAG	MMTPQEVNDYKNKWKMAAYFLVHVHSDDRAKVRDWCKDFCFQWRYDIKTLTDNYTDTVSFQLSEDCDAFQEWYSNV
Ga0211690_10056736	F005796	GGAG	MLELSVLMFCMIGCGMTCYNLGKQEGIESTIEHLVDQGMIQVEEDPK
Ga0211690_10056738	F025150	GGAG	MINVSTEGKQLPEYDTFIDECIMALFPSDAQYDINIWFKKYVDKDGTHAGFCMGDEIESAIDIATHWMYEDAEEVAYEPHEIASNIAHELVHAKQFYKGQINMVDHVWKHNQETINCDGLEYADTPWEVEAYAYEDILTDLLWENV