NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211690_1001687

Scaffold Ga0211690_1001687


Overview

Basic Information
Taxon OID3300020335 Open in IMG/M
Scaffold IDGa0211690_1001687 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000768 (ERX556030-ERR599035)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9047
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (4.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_082
CoordinatesLat. (o)-47.1906Long. (o)-58.2682Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002629Metagenome / Metatranscriptome542Y
F011006Metagenome / Metatranscriptome296Y
F015148Metagenome / Metatranscriptome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0211690_100168717F011006N/AMKKLINKYLVKKSIRPYKIVPLSTGVIVEHYRNGKLKTEYYGLV
Ga0211690_100168718F015148N/AMDWYSPPEYKDYECTECGAEIDKPGVCSGTCHEASMI
Ga0211690_10016873F002629N/AMIVNEAAWEKLKKQIEYHTQHDSEITDVLINYQVKPGKKNYLKLNITIDKWDKLTE

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