NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211502_1023222

Scaffold Ga0211502_1023222


Overview

Basic Information
Taxon OID3300020332 Open in IMG/M
Scaffold IDGa0211502_1023222 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000029 (ERX555956-ERR598975)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1262
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_034
CoordinatesLat. (o)18.49Long. (o)39.8483Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F023710Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0211502_10232223F023710AGGAGMQKNIEKQIQIFIDGIGSIKRQEFVNGTLYLKLEEDKDCDFIHKELRTFYKEFINPEGGVNMYFVGDEFAFDFVPEDAEAPVFTDKEESDVDMMLELENEMSRGK
Ga0211502_10232224F000302AGGAGMVKTMTQDTKDRIADLERQKIALEDQLELVGNNLVKMHEIEQEIFEIDDTIGKLTA

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