Scaffold Ga0211502_1017744

Overview

Basic Information

• Taxon OID: 3300020332
• Scaffold ID: Ga0211502_1017744
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX555956-ERR598975)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1477
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_034
• Coordinates
  • Lat. (^o): 18.49
  • Long. (^o): 39.8483
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014465	Metagenome	263	Y
F024106	Metagenome	207	Y
F077180	Metagenome	117	Y
F081218	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211502_10177443	F081218	GGAGG	VKIGDLVKWVGGSYHNLQGIIVDTRDIRDLGERHEVKVIWDGKGLGSLKQKPGGSWQRAGCVKVISSVEPEDANR
Ga0211502_10177444	F077180	AGTAG	MKRGDLLRYEIDGSLWIVEWADDKWVKIVGVTHPILFEESGLEVISENR
Ga0211502_10177445	F024106	GGAG	MDFQVGDLITLKHFGTRECPSPIAMVVSLEALVFDRIQIQFFDSDRPEMAAPKHWKVVSRNYETGRPAEV
Ga0211502_10177446	F014465	GGA	MKARGMVMIGALVRDCSQIMKIVTGYKCDQRGEWIQFAGDHVNAWYQLENFEILSLEP