Scaffold Ga0211502_1004950

Overview

Basic Information

• Taxon OID: 3300020332
• Scaffold ID: Ga0211502_1004950
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX555956-ERR598975)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3204
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_034
• Coordinates
  • Lat. (^o): 18.49
  • Long. (^o): 39.8483
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F029601	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211502_100495011	F005524	AGAAGG	MDIGDKVQHFGTGSIGTVIDSSYEMETPFQQQLNVQWEDDLAPHKDSWERRQDLNVVFPTPYDFTIAD
Ga0211502_10049507	F029601	AGGAG	VRFSATDDQFNGAKGIIVRCVHGPTYRQGLHYEVQTFDGYVIIALDFELERLENEVEIPN