Scaffold Ga0211573_1084055

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211573_1084055

Scaffold Ga0211573_1084055

Overview

Basic Information
Taxon OID	3300020327 Open in IMG/M
Scaffold ID	Ga0211573_1084055 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001964 (ERX556115-ERR599070)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	754
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_137
Coordinates	Lat. (^o)	14.2016	Long. (^o)	-116.696	Alt. (m)		Depth (m)	40
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025764	Metagenome	200	Y
F034595	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211573_10840551	F034595	GAG	MNINDRLDNMSKEQLLNLVKEIKITCESNRRKTGSGNKVFNFILRLIKGEI
Ga0211573_10840552	F025764	AGG	MSLEKITSVKDLINIDHDGASVSYGGLAGMLVATVKWADKFIRKDEPALALKLLEQALKENGKVNDVVERYNRRFNAESEKV

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.