Scaffold Ga0211561_1004424

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211561_1004424

Scaffold Ga0211561_1004424

Overview

Basic Information
Taxon OID	3300020326 Open in IMG/M
Scaffold ID	Ga0211561_1004424 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100002003 (ERX556099-ERR599004)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4366
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_138
Coordinates	Lat. (^o)	6.3929	Long. (^o)	-103.0691	Alt. (m)		Depth (m)	450
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000107	Metagenome / Metatranscriptome	2222	Y
F001156	Metagenome / Metatranscriptome	763	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211561_10044242	F001156	N/A	MPNYNKQILERIVGTKSKGVLGEKFKLAFAKKLGIKVEDMKKGIVDKVYNKEKVER
Ga0211561_10044244	F000107	N/A	MTITNTTVVDTTDKAIIKSVGIGSETDQKMIEGGAENLASGNNESLVSLIECYYLIKGTGTLKISADSEASDLSLTGKGKYGLRPDQLKFGNDKQILLTTDSNVESYLLVTEFRRND

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.