Scaffold Ga0211507_1053539

Overview

Basic Information

• Taxon OID: 3300020325
• Scaffold ID: Ga0211507_1053539
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000034 (ERX556073-ERR598966)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 799
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_036
• Coordinates
  • Lat. (^o): 20.8151
  • Long. (^o): 63.5046
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004819	Metagenome / Metatranscriptome	422	Y
F024414	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211507_10535391	F024414	AGGA	MGTRLAEIISDRHEDLLYEDSRAMKLTSYVMAERCLQVEAYEIYNGYKEGDYSTLTYILEGGFKGFHNMEPSELIEEYKQIEEQWYELESSCELHW
Ga0211507_10535392	F004819	N/A	ARVLKEDLATLPFVLDTCNRDINVARASTYVTWDHDKEMWCEVDHLMMNFYIKARTSETREELEDKINRGVVELLKGPRYYEQAKVYCMIDMDYPEDESIYDLVKRPKKDRNPYCVSGDEGDITYHVTLHVQECNATDLAIYDNKDRGDFFDLSGNNLESPMADLERIVNGN