Scaffold Ga0211688_1023933

Overview

Basic Information

• Taxon OID: 3300020317
• Scaffold ID: Ga0211688_1023933
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1317
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_082
• Coordinates
  • Lat. (^o): -47.1208
  • Long. (^o): -57.8265
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012788	Metagenome / Metatranscriptome	277	Y
F086365	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211688_10239333	F012788	N/A	MQNLTIDNRIQILSTIDELNQYLNGYVTKTSLQITLNELINKIE
Ga0211688_10239334	F086365	GAG	MKFTKNELNLMRYAMEDLLNGDDVPNDKWLKTKFETHVNEIIEKIDLNLTSVVD