Scaffold Ga0211688_1010853

Overview

Basic Information

• Taxon OID: 3300020317
• Scaffold ID: Ga0211688_1010853
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2126
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_082
• Coordinates
  • Lat. (^o): -47.1208
  • Long. (^o): -57.8265
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002915	Metagenome / Metatranscriptome	521	Y
F006870	Metagenome / Metatranscriptome	363	Y
F007087	Metagenome / Metatranscriptome	358	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211688_10108532	F002915	AGG	MKRLLLLSLIVPIIALGKEVFTNDQGLKIEYVKPSVSCFYDKEAYEGYLNTCLMLPNYETCAQTKYENYICSDRNMIKQLEKKAKEAG
Ga0211688_10108534	F007087	AGG	MKKLLLIALTIPNFVLADEIKLVCEGEESNYRNDVLENTSKTSLKLQVRDDSIVIDSMTYKSKTFDYGAIKGSSKYVKEDSQIVLETTQVSNECDTALLNVKLNRSNGMIESTAKRIGACDGSSFTTSTKFKGKCK
Ga0211688_10108535	F006870	N/A	MKKISLFFLLTLPLVLTSKASILETKLSPQGSDKYNFLITGDAKASEKNLRDVFQNKVNEVCGTRFEIISITTDHINKERVKNNILDGSFKCFVKSQM