Scaffold Ga0211688_1005749

Overview

Basic Information

• Taxon OID: 3300020317
• Scaffold ID: Ga0211688_1005749
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3104
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_082
• Coordinates
  • Lat. (^o): -47.1208
  • Long. (^o): -57.8265
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022458	Metagenome / Metatranscriptome	214	Y
F030151	Metagenome / Metatranscriptome	186	Y
F068870	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211688_10057492	F030151	N/A	MLYFEATNIEELELEAKKRAHEVSVATTSAIIRALDQGADKVVVGILSTLDLDLSVEKTGYLEALETNLVRCEESEEFELCKESIKWIKKLRE
Ga0211688_10057493	F022458	N/A	MIDDWLNQNPDDGFDPNDHGIEMDEIAKLNAMADMREDQEIWAREQANKFYNDFETLDIKESVLAVTSLIKTKVLNIKQVNTMLDNMIEVFSQDEEYEKCHICNEIKKGLK
Ga0211688_10057496	F068870	N/A	MDPLTSKPSCIEDLKELVNNLTDRDVNIKNHLSCIKSVLEDKRIKNDATKIKKIKQILNN