NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211688_1000987

Scaffold Ga0211688_1000987


Overview

Basic Information
Taxon OID3300020317 Open in IMG/M
Scaffold IDGa0211688_1000987 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10442
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_082
CoordinatesLat. (o)-47.1208Long. (o)-57.8265Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004370Metagenome / Metatranscriptome441Y
F012239Metagenome282Y
F052947Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0211688_100098710F004370N/AMYKVRKINFGWYKRRYGILLENLPPLKQKLLLNNRHMKWLNSDTQAFEVIFKVEDMNGHEKNVNKAIWNPFRETFTTLKELEKDADLISWNCGICKVPIKSRMDSKKVENFVCSKCSKAHNSRNRSVDGRIIDTSIRFTKHCKHLLKKEQREFMTYAKRSSKA
Ga0211688_10009873F012239GAGMLIDNKFELEIPTHIAFTLYKNDYIDNLIISKVKKECKNKSKKDNEFIVSLDGFRNAITKSAFLRAELKKTLDQDMLPNPNFKPNSIFFLQSIINRLPNLNTITFKISDEKVFSRLVKVDGGREIVSFHFNIIEGTFDLTQILDREQLDTFNKRFMDVGIMKNKYLERSSYFYIKAQTLFDILSDMDEAQVLDAFEIITSVDPKIEEDDPILLVKTDYTPY
Ga0211688_10009877F052947N/AMRAQFLKALIKKFPNYMELGGAVKRYHDLRQTKLTKEECEEIVLGSSFSIN

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