Scaffold Ga0211688

Basic Information
Taxon OID	3300020317 Open in IMG/M
Scaffold ID	Ga0211688_1000324 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020317 Open in IMG/M

Scaffold ID

Ga0211688_1000324 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23764
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (15.15%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

23764

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (15.15%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_082
Coordinates	Lat. (^o)	-47.1208	Long. (^o)	-57.8265	Alt. (m)	Depth (m)	40
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_082

Coordinates

Lat. (^o)

-47.1208

Long. (^o)

-57.8265

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013325	Metagenome / Metatranscriptome	272	Y
F038691	Metagenome / Metatranscriptome	165	Y
F059026	Metagenome / Metatranscriptome	134	N
F090614	Metagenome / Metatranscriptome	108	Y
F102062	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211688_100032412	F059026	N/A	MEHIKDYKLFKESLDTTLLTEAYSSDILRQFAAQDSSSRWRGGIAKDMQKFASLALDKISDADFTTTTPEAYWKGGDAKNPNKVGFFVDADPGFIKWAKANKKYMPRGLDLKNISKYGVVLSVIRGGIGMYHGFSMDRGSSYSRHRKGTEERYGILAKEYETNSLYNGWEGKPAAKVTRKNLIDSATRVYVLDLDSLRDKYDVSGLTSDRANAKSGATALKDAKTIKDENRKRYDAILTDRAAMTDVDQAVKDSIELLNQHISDALKDGTMDKYGHLVIGKDPKGRSLKITDGANYMKNLLDDYQRYKDYERQDKEAKADGREDNWHAREIKNYAKRIQDRAKAVKAKNYAW
Ga0211688_100032413	F038691	N/A	MGFHKRHISNDNVISMFRSNDGIQKIRSWYTRGVDALITESGLASQVGSILSDDEWRQLGTVRQDEEIIKIIQQELGVEDIKK
Ga0211688_100032414	F013325	N/A	MAKQVINKDTGKIVNITDHSHDKYDGPEGQAMLKSEIINENPRKMSEIIKDKKAALKKNEDLLRNLQTNEYDIPVGTAKLYKQIMKFLEKEADWGHTTATGLIMLYSNLKEQQSVVREKDWDGIVKLRGTSITIFWTMITSMKGKGFFAARDFVEMMAAFGKDLADVVNKVHEDNKGLRENHTHMSELDKEVNSPDVILDVAIDEYNAAEDELNNLMDEVDPVVETV
Ga0211688_100032416	F090614	N/A	MDIIHKIVRKVKSWFLPKHEGKFEYSPEGFVKARRWAKNQPHPKFPDHPSLSLWDHVNSNHIDSEYKLSEINKVKTKKNKSI
Ga0211688_10003244	F102062	N/A	MKILIWIKREEAVTGDISKYYTYLPFNESYQEWVQVEITQDEFTRLEDND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211688_1000324

Overview

Ecosystem & Geography

Associated Families

Sequences