Basic Information | |
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Taxon OID | 3300020317 Open in IMG/M |
Scaffold ID | Ga0211688_1000324 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 23764 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (15.15%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_082 | |||||||
Coordinates | Lat. (o) | -47.1208 | Long. (o) | -57.8265 | Alt. (m) | Depth (m) | 40 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013325 | Metagenome / Metatranscriptome | 272 | Y |
F038691 | Metagenome / Metatranscriptome | 165 | Y |
F059026 | Metagenome / Metatranscriptome | 134 | N |
F090614 | Metagenome / Metatranscriptome | 108 | Y |
F102062 | Metagenome / Metatranscriptome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211688_100032412 | F059026 | N/A | MEHIKDYKLFKESLDTTLLTEAYSSDILRQFAAQDSSSRWRGGIAKDMQKFASLALDKISDADFTTTTPEAYWKGGDAKNPNKVGFFVDADPGFIKWAKANKKYMPRGLDLKNISKYGVVLSVIRGGIGMYHGFSMDRGSSYSRHRKGTEERYGILAKEYETNSLYNGWEGKPAAKVTRKNLIDSATRVYVLDLDSLRDKYDVSGLTSDRANAKSGATALKDAKTIKDENRKRYDAILTDRAAMTDVDQAVKDSIELLNQHISDALKDGTMDKYGHLVIGKDPKGRSLKITDGANYMKNLLDDYQRYKDYERQDKEAKADGREDNWHAREIKNYAKRIQDRAKAVKAKNYAW |
Ga0211688_100032413 | F038691 | N/A | MGFHKRHISNDNVISMFRSNDGIQKIRSWYTRGVDALITESGLASQVGSILSDDEWRQLGTVRQDEEIIKIIQQELGVEDIKK |
Ga0211688_100032414 | F013325 | N/A | MAKQVINKDTGKIVNITDHSHDKYDGPEGQAMLKSEIINENPRKMSEIIKDKKAALKKNEDLLRNLQTNEYDIPVGTAKLYKQIMKFLEKEADWGHTTATGLIMLYSNLKEQQSVVREKDWDGIVKLRGTSITIFWTMITSMKGKGFFAARDFVEMMAAFGKDLADVVNKVHEDNKGLRENHTHMSELDKEVNSPDVILDVAIDEYNAAEDELNNLMDEVDPVVETV |
Ga0211688_100032416 | F090614 | N/A | MDIIHKIVRKVKSWFLPKHEGKFEYSPEGFVKARRWAKNQPHPKFPDHPSLSLWDHVNSNHIDSEYKLSEINKVKTKKNKSI |
Ga0211688_10003244 | F102062 | N/A | MKILIWIKREEAVTGDISKYYTYLPFNESYQEWVQVEITQDEFTRLEDND |
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