Basic Information | |
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Taxon OID | 3300020317 Open in IMG/M |
Scaffold ID | Ga0211688_1000243 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 28882 |
Total Scaffold Genes | 47 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (61.70%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_082 | |||||||
Coordinates | Lat. (o) | -47.1208 | Long. (o) | -57.8265 | Alt. (m) | Depth (m) | 40 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004343 | Metagenome / Metatranscriptome | 442 | Y |
F057353 | Metagenome | 136 | N |
F058118 | Metagenome | 135 | N |
F093726 | Metagenome | 106 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211688_100024329 | F058118 | AGGA | MAIKLYNLEVLVDDLVYVGSEIRAKSQEEAIKILGIISGGEVTEDSEILSCEEKTLH |
Ga0211688_100024336 | F057353 | AGGAG | MSVTHYNFRKPKINRQEHESINKIFTHPHFNALINPKALDVLTELGISAKQFQDIINKNKSILTSYKNKRIK |
Ga0211688_100024338 | F004343 | GAGG | MTQHKEMIDEARMLLKTKMDNTPSMSGDFSKDYWLLTYPCGKIVKTYEDKRKNDVVVQESYT |
Ga0211688_100024339 | F093726 | GGAG | MTYEIAEYKYIGHMRSVYGLTRDLEYPSRKHSKQDSEGNWLLISYNGKKMGKVLTNGKVI |
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