Scaffold Ga0211542

Basic Information
Taxon OID	3300020312 Open in IMG/M
Scaffold ID	Ga0211542_1004755 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX556125-ERR598977)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020312 Open in IMG/M

Scaffold ID

Ga0211542_1004755 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX556125-ERR598977)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4006
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4006

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_041
Coordinates	Lat. (^o)	14.5375	Long. (^o)	70.0244	Alt. (m)	Depth (m)	60
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

TARA_041

Coordinates

Lat. (^o)

14.5375

Long. (^o)

70.0244

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017050	Metagenome / Metatranscriptome	243	N
F018269	Metagenome	236	N
F085688	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211542_10047553	F018269	N/A	MKIGINLVGVSYNNAIEGGRLRDYENSIQNFYKNVVNPLRKDGHEVKFYLFSYKNEKQDKIIEDYSPAVKHTFIEQQLNKLGGGDRVGNGMKVMTVSYLNSLQQLYNEDLDLVISTRYDINFFRNPFEEYDYDFTKCSFLWREPEFTDLPIVNDTFIVFPYKMLESFFDAVVEMETNPPHGVNSGMHNLYLPMVNQVGEDNVVWLDDEFKSAVDNSLYKLERTE
Ga0211542_10047555	F017050	GGTGG	MSKLISGYWWAWRETEAGKKSMQTLRKFYPDADLFINVDYEGDVEGYQKVGEELGATVTRNNFQLGYCGNFGDRDIGYEHWTKEKAVEWLRGVYEACKKTDSKYMMLFEEDDFILKPISILNEEFSMAIHPTAPSPTGRMRANAIPYQFKQYAESVGGIGDSPGYASGGGTIFNRVQFIDSYERALDLYTKHFDEFCKTSKIYGWQDFLFQYVMQLAGYKIIQNPKLCELWEVPNFEGFEILTGCKQPELVEL
Ga0211542_10047556	F085688	AGTAG	MIILGCITKYKPEDIKPFVESIHQSGYKGKKVMMVYEVPQETIDYLKSKGWELYQNELQQHIILQRFRDIYKLLQQFPDEIVIWCDVKDVIFQKDPTEWIDMNMDEPILSFSECIKMKDDPWACVNSGTSFPMEWEWLQNKVSYCAGTIVGESHYLRDLFINIYRWSMTSANPDQLSDQAAYNVLINLNGIDDCVQLVNQEEGFVTQLGTVLVKKDEFKDVLLEPTPIVDENYIVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211542_1004755

Overview

Ecosystem & Geography

Associated Families

Sequences