Scaffold Ga0211542_1000211

Overview

Basic Information

• Taxon OID: 3300020312
• Scaffold ID: Ga0211542_1000211
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX556125-ERR598977)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23580
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (63.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_041
• Coordinates
  • Lat. (^o): 14.5375
  • Long. (^o): 70.0244
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035474	Metagenome / Metatranscriptome	172	Y
F058203	Metagenome / Metatranscriptome	135	Y
F066132	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211542_100021121	F058203	AGGAG	MSVLHHESILETLYEEVLEEFPNLDEAHCEIIAKQRFEDMCQ
Ga0211542_100021122	F066132	GGAG	MFTVNNKDYSHKELNTMYDFFTQEQWDVIDQALDCYAQTQKYEGIVEDTHQVRDAMYTLLRSAY
Ga0211542_100021123	F035474	N/A	MSKSLFSQSINLCDDYLGLEWQRGVVTSMFDSYRRENDLDPNLAIYHYGNDRFEVRTMVYDDSKGCIIGDQIDLGTFDNVYDAQDCAEDYLKDLLLDLGV