NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211681_1067152

Scaffold Ga0211681_1067152


Overview

Basic Information
Taxon OID3300020309 Open in IMG/M
Scaffold IDGa0211681_1067152 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000795 (ERX556064-ERR599104)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)592
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_085
CoordinatesLat. (o)-62.2658Long. (o)-49.1658Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016738Metagenome / Metatranscriptome245Y
F059366Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0211681_10671522F016738AGGAGLKNYLAEPKPVSPYKDLIDDYQGSVTKAAHGESGGLDHIIKSQLNPTARKKYNKERKVA
Ga0211681_10671523F059366AGGAMISGSESVKTMVLENAVFSSILAGSRRVSEKNRQIAINNEVKLLKHHRELGHQTAFENERSLKTERLLMREHRRWNLTKGYFAISEGVEL

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