Scaffold Ga0211616_1015943

Overview

Basic Information

• Taxon OID: 3300020306
• Scaffold ID: Ga0211616_1015943
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX556014-ERR599098)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1145
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -17.2387
  • Long. (^o): 53.9775
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039590	Metagenome	163	Y
F046318	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211616_10159431	F046318	AGGAGG	MKYDQTFADSPIDNDWTNSEKREFFIKEISNLAFGEDTIERGYSMEEVIERLKVFCEF
Ga0211616_10159434	F039590	AGGAGG	MIKKIEVTLLVEVDTEDEFICPSGDPLLENCVVNTVEDGFFTDPVKILEVKEVKDDD