Scaffold Ga0211616_1000061

Overview

Basic Information

• Taxon OID: 3300020306
• Scaffold ID: Ga0211616_1000061
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX556014-ERR599098)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16765
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (34.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -17.2387
  • Long. (^o): 53.9775
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004325	Metagenome / Metatranscriptome	443	Y
F021558	Metagenome / Metatranscriptome	218	Y
F027869	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211616_100006114	F021558	AGG	MSVLPRTQLGYTLGIRRNKDIYGQGERLAKNPFEQSRGRTRMAGDRRVDIFTAERDYMRAPTVRGDYLPNRFVSSIPVSRLEISDG
Ga0211616_10000618	F004325	N/A	MKKKKSTTEKADQFLTGLGTAGGAIGSPQLVGFGGTDVQSQVMSGNVDEYQNIRMRQAEINIGESIPMPPDLDASYLKLNLPGSPLPANAVLAKNNIIRAQQTQDLIMSQGQMFLTQYLPAAGLSQLPVGQPPLESRKGKK
Ga0211616_10000619	F027869	N/A	MEHKKAKKAKKMAEDAMRMMALEEQMAQMGQPDLQPEGGGVNPMGRIGTVPPSTYSLANMLDGTTTQSVINPET