Scaffold Ga0211615_1006443

Overview

Basic Information

• Taxon OID: 3300020299
• Scaffold ID: Ga0211615_1006443
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX555923-ERR599016)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1531
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -16.9675
  • Long. (^o): 53.9199
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003423	Metagenome / Metatranscriptome	487	Y
F054895	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211615_10064432	F003423	GGAGG	MNEFDAPDNGVKQMRETIDRKDDAIKKLEAELASYKDKEIDNVFGSLGLSTDKGFGKALKQVYDGPVDTESISQFAKDEYGWEPTGQVQEVTQPEPAPQVQDDARSRVAALDANSNSDVPMNINDELVAALKGASVKDSLRAKLAIMDNEKKQNK
Ga0211615_10064433	F054895	GGAGG	MAGISLTGDTLYSQKINNFAGELFRVGGQRTPFLSATGGLNGGKVLQSTFWQIQAAD