Scaffold Ga0211615_1003536

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211615_1003536

Scaffold Ga0211615_1003536

Overview

Basic Information
Taxon OID	3300020299 Open in IMG/M
Scaffold ID	Ga0211615_1003536 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX555923-ERR599016)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2001
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_052
Coordinates	Lat. (^o)	-16.9675	Long. (^o)	53.9199	Alt. (m)		Depth (m)	75
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001918	Metagenome	617	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211615_10035362	F001918	GAGG	MKIALCFAGQPRFINLMNFDNLTDGHDVTTYAHFWWDDSYRGDMFAWNSELKYPDDYDPIDHFEHKMKPKQLVWEEYPKFDMSPYKMVSQMEFPLSDEVVRQSIYRQKCQWTSVKKSVDLVDDEFDIVIRMRTDLEFHDKVDLEACKGNGLYMMNGSYQAGAGREYCDWFYCGPHKRVQEFDPLKVFDDFYADGIRHMHDLVIETLRTLQIPHAVLDLKAWMMDRSKIK

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