Scaffold Ga0211615_1000634

Overview

Basic Information

• Taxon OID: 3300020299
• Scaffold ID: Ga0211615_1000634
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX555923-ERR599016)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4420
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -16.9675
  • Long. (^o): 53.9199
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001905	Metagenome	619	Y
F090250	Metagenome	108	N
F095411	Metagenome	105	N
F103059	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211615_10006341	F103059	N/A	TKKESKLMKQKIYYSVDEETGEITLDLHEMEQEAIAQLQAEYPDKLVTSVYVT
Ga0211615_100063410	F090250	GAGG	MKKMAFVTLKTVLAVILLSACLVLLNSCSYSVKVGKKCTPGSTEWSYLWFVKGESDLSKDNCS
Ga0211615_100063411	F095411	GAG	MMTGKNKYKHVRVTWWDPCQSNEAWVPEEEILEHDVATCVDVGYIYKKTKSKLWLFTSYSTDSKGLEVGGLQCIPTGCIKKIEVMK
Ga0211615_100063412	F001905	GAG	MRFPYYIRMAILLCVGAFVPILIHHIVYKLWDVSVLRAAEITFILCIPVAAWMATKINERWHDDREE