Scaffold Ga0211657_1006098

Overview

Basic Information

• Taxon OID: 3300020298
• Scaffold ID: Ga0211657_1006098
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000953 (ERX556051-ERR599128)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3404
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2771
  • Long. (^o): -85.2995
  • Depth (m): 480

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019486	Metagenome / Metatranscriptome	229	Y
F070936	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211657_10060982	F019486	GGAGG	MKTLKTHINEARPKDNHRWNAHDELATMNFIYKDFKKQLGRDPGKPYMDDDALVVGDETVLTVKDNTSIADMKAAVAAWIGKNVKPEKGEAKVGRFNVKLPDELAGVLGNKATKLENPRAIIKTDVDSAKEIQKAVKGLMKRGPEGKGVKFRMMKRKDHVAVYLDFDDGKIMQDALKKIAGIK
Ga0211657_10060983	F070936	GGA	MPVNVTAALRDMREAQELKEKWNENLSKAGLAEYRIAYKTLSKSGIKPKYLKEMEKFYDDLVIGGMYTSRSAEEAGIRKIDGKTKYTNQNW